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rVarBase
SNP Report
Basic Infomation
Name
rs10152566  
dbSNP
Location
chr:15,67475083
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10152593
0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289790
0.80[AMR][1000 genomes]
rs2289791
0.80[AMR][1000 genomes]
rs3784681
0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7181556
0.80[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SMAD3
Proximal transcriptional regulation
SMAD3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)