SNP Report
Basic Infomation
| Name | rs7495132 dbSNP |
|---|---|
| Location | chr:15,91172901 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10048037 | 0.99[ASN][1000 genomes] |
| rs10438437 | 0.86[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];1.00[YRI][hapmap] |
| rs10852137 | 0.94[ASN][1000 genomes] |
| rs11856388 | 1.00[ASN][1000 genomes] |
| rs12903655 | 0.86[CHB][hapmap];0.90[YRI][hapmap] |
| rs12904055 | 0.86[CHB][hapmap] |
| rs12908296 | 1.00[ASN][1000 genomes] |
| rs12908911 | 0.85[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12909246 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12915979 | 0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap] |
| rs16944683 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[ASN][1000 genomes] |
| rs17180057 | 1.00[YRI][hapmap] |
| rs28621895 | 0.99[ASN][1000 genomes] |
| rs35977271 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3743405 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4454949 | 0.86[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap] |
| rs4932175 | 0.92[CHB][hapmap] |
| rs4932356 | 0.85[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.93[YRI][hapmap] |
| rs4932359 | 0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.93[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs5011653 | 0.83[GIH][hapmap] |
| rs56961537 | 1.00[ASN][1000 genomes] |
| rs57373970 | 0.94[ASN][1000 genomes] |
| rs71407317 | 0.94[ASN][1000 genomes] |
| rs71407320 | 0.81[EUR][1000 genomes] |
| rs7165170 | 1.00[GIH][hapmap] |
| rs7171533 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7175560 | 0.81[AFR][1000 genomes] |
| rs7176303 | 0.86[CHB][hapmap] |
| rs7178774 | 0.86[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259746 | Distal transcriptional regulation |
| MAN2A2 | Distal transcriptional regulation |
| ENSG00000259736 | RNA binding protein mediated regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014