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rVarBase
SNP Report
Basic Infomation
Name
rs7090584  
dbSNP
Location
chr:10,101312292
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11190138
0.85[ASN][1000 genomes]
rs11596008
0.91[CHB][hapmap];0.89[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11815803
0.83[ASN][1000 genomes]
rs6584280
0.83[ASN][1000 genomes]
rs7899176
0.91[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
GOT1
Distal transcriptional regulation
ENSG00000224934
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
C10orf95
SCAN
PITX3
SCAN