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rVarBase
SNP Report
Basic Infomation
Name
rs402223  
dbSNP
Location
chr:14,69282333
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs168961
0.94[ASN][1000 genomes]
rs168962
0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194730
0.82[EUR][1000 genomes]
rs194733
0.83[EUR][1000 genomes]
rs194734
0.83[EUR][1000 genomes]
rs194746
0.94[ASN][1000 genomes]
rs194747
0.94[ASN][1000 genomes]
rs194778
0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs402224
0.94[ASN][1000 genomes]
rs4899259
0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8011558
0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SNAI1
Distal transcriptional regulation
RAD51B
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)