SNP Report
Basic Infomation
| Name | rs26528 dbSNP |
|---|---|
| Location | chr:16,28517709 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12446550 | 0.90[GIH][hapmap];0.83[EUR][1000 genomes] |
| rs151181 | 0.81[GIH][hapmap] |
| rs153106 | 0.83[EUR][1000 genomes] |
| rs153109 | 0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs153111 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs240707 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs27741 | 0.88[GIH][hapmap] |
| rs28698667 | 0.90[GIH][hapmap];0.83[EUR][1000 genomes] |
| rs28772958 | 0.83[EUR][1000 genomes] |
| rs34835 | 0.86[GIH][hapmap] |
| rs3859172 | 0.90[GIH][hapmap] |
| rs40833 | 0.84[AMR][1000 genomes] |
| rs40834 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs40836 | 0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs40837 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4788083 | 0.83[EUR][1000 genomes] |
| rs4788084 | 0.90[GIH][hapmap];0.82[EUR][1000 genomes] |
| rs4788085 | 0.83[EUR][1000 genomes] |
| rs62034319 | 0.83[EUR][1000 genomes] |
| rs62034321 | 0.82[EUR][1000 genomes] |
| rs62034323 | 0.83[EUR][1000 genomes] |
| rs62034324 | 0.81[EUR][1000 genomes] |
| rs62034326 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CLN3 | Distal transcriptional regulation |
| IL27 | Distal transcriptional regulation |
| CCDC101 | Distal transcriptional regulation |
| IL27 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014