SNP Report
Name | rs1893217   dbSNP |
---|---|
Location | chr:18,12809340 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11663253 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2014857 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2542147 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2542148 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2542149 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2542150 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2542151 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2847259 | 0.91[ASN][1000 genomes] |
rs2847260 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2847274 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2847278 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2847280 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2847293 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34920518 | 1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs45450798 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60474474 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60735058 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60751993 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7237497 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs8096138 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs888270 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PTPN2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014