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rVarBase
SNP Report
Basic Infomation
Name
rs1801274  
dbSNP
Location
chr:1,161479745
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12139150
0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4657041
0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6658353
0.95[EUR][1000 genomes]
rs6671847
0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7511868
0.81[GIH][hapmap]
rs7512140
0.81[GIH][hapmap]
rs7535475
0.81[GIH][hapmap]
rs7551957
0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
FCGR2A
Proximal transcriptional regulation
FCGR2A
Distal transcriptional regulation
FCGR2A
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
PCP4L1
SCAN
SH2D2A
SCAN
KCNJ10
SCAN