SNP Report
Name | rs11741861   dbSNP |
---|---|
Location | chr:5,150277909 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10041072 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10051804 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10051924 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10058821 | 0.90[EUR][1000 genomes] |
rs10058943 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10059011 | 0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs10065172 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10463310 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11167518 | 0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11740172 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11743488 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11746807 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11747270 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11748151 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11748158 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11748553 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11957134 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12656600 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12659118 | 0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs13361189 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1428551 | 0.89[EUR][1000 genomes] |
rs1428552 | 0.89[EUR][1000 genomes] |
rs17111376 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17800987 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2004711 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2100932 | 0.82[ASN][1000 genomes] |
rs2161363 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs34005003 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs34156253 | 0.82[EUR][1000 genomes] |
rs35707106 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4958423 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4958424 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4958426 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4958427 | 0.83[TSI][hapmap] |
rs4958842 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4958843 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4958852 | 0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes] |
rs58398445 | 0.82[EUR][1000 genomes] |
rs58717741 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs59283234 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs59321715 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs59624008 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs59842057 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs60134818 | 0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs61270113 | 0.87[EUR][1000 genomes] |
rs6579807 | 1.00[CEU][hapmap];0.90[JPT][hapmap] |
rs6874560 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6875011 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6888072 | 0.90[EUR][1000 genomes] |
rs6888154 | 0.83[TSI][hapmap] |
rs6888206 | 0.98[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs73282234 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs73282255 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs73282284 | 0.83[ASN][1000 genomes] |
rs73284126 | 0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs751627 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7724036 | 1.00[CEU][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7724558 | 0.86[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes] |
rs931058 | 0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes] |
rs9637870 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9637876 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
IRGM | RNA binding protein mediated regulation |
ZNF300 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ANKDD1A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014