SNP Report
Basic Infomation
| Name | rs10168889 dbSNP |
|---|---|
| Location | chr:2,43841717 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 64)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10186307 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10186441 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10495903 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11886047 | 0.86[ASN][1000 genomes] |
| rs11889544 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11889803 | 0.90[EUR][1000 genomes] |
| rs11901680 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11904361 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12463527 | 0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12466060 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12467151 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12467420 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12469373 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12469695 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12469959 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12471686 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12471904 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12473987 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12474030 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12474102 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12475503 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12478337 | 0.89[EUR][1000 genomes] |
| rs13404811 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17031079 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17031088 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17031092 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17031095 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17031106 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17031116 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs35478206 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4339008 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs55640722 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55855805 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55921927 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57066469 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60735069 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60868396 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs60955978 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61271889 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61754256 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6544675 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6705351 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6712944 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6715003 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6717791 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6725688 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6726404 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6731636 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6749617 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6759383 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6759861 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6760391 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72868625 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72868628 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72868636 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73925552 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73925553 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73925554 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7559670 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7559723 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7568901 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7576643 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7601039 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7602701 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000207411 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
| Distal block | Cell Line | Cell type | Cell Stage | Data source |
|---|---|---|---|---|
| chr2:43839149..43841796-chr2:43848003..43850752,3 | K562 | blood:Leukemia cell | wgEncodeGisChiaPet |
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014